[method-development] HPC Engine for Mass Spectrometry based Omics Data

High Performance Computing Algorithms for Accelerating Peptide Identification from Mass-Spectrometry Data Using Heterogeneous Supercomputers

GPU-acceleration of the distributed-memory database peptide search of mass spectrometry data

Systems and methods for peptide identification

Re-configurable Hardware for Computational Proteomics

Need for High-Performance Computing for MS-Based Omics Data Analysis

Machine-Learning and the Future of HPC for MS-Based Omics

Introduction to Mass Spectrometry Data

High-Performance Computing Strategy Using Distributed-Memory Supercomputers

High-Performance Algorithms for Mass Spectrometry-Based Omics

G-MSR: A GPU-Based Dimensionality Reduction Algorithm

Fast Spectral Pre-processing for Big MS Data

Existing HPC Methods and the Communication Lower Bounds for Distributed-Memory Computations for Mass Spectrometry-Based Omics Data

Computational CPU-GPU Template for Pre-processing of Floating-Point MS Data

Communication lower-bounds for distributed-memory computations for mass spectrometry based omics data

A Easy to Use Generalized Template to Support Development of GPU Algorithms

Source data: high performance computing framework for tera-scale database search of mass spectrometry data

Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey

High performance computing framework for tera-scale database search of mass spectrometry data

HiCOPS: High Performance Computing Framework for Tera-Scale Database Search of Mass Spectrometry based Omics Data

Methods and systems for compressing data

Slm-transform: A method for memory-efficient indexing of spectra for database search in lc-ms/ms proteomics

LBE: A Computational Load Balancing Algorithm for Speeding up Parallel Peptide Search in Mass-Spectrometry based Proteomics

Efficient shared peak counting in database peptide search using compact data structure for fragment-ion index

2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)