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Software (active development)
ProteoRift
End-to-end ML pipeline for Data Dependent Acquisition (DDA) MS data
HiCOPS & GiCOPS
HPC software infrastructure for processing tera-scale MS data
MAESTRO
An interconnected set of open source machine-learning models for large-scale mass spectrometry based omics analysis.
Completed Software Projects
ASD-DiagNet
ML algorithm identifying Austin and atypical brains using fMRI data
J-EROS
ML algorithm for computing similarity between two multivariate fMRI time series
MS-Reduce
Linear-time tool that allows massive reduction in amount of mass spectrometry data
Mass-Simulator
ML algorithm for computing similarity between two multivariate time series applied to ADHD-200 data
Temporal Pattern Mining (TPM) algorithm
Clusters any time-series data set, specifically iTRAQ LC-MS/MS data sets
phyNGSC
Hybrid strategy between MPI and OpenMP to accelerate the compression of big FASTQ datasets
Knight Foundation School of Computing and Information Sciences (KFSCIS)
Florida International University (FIU)
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