Our Software

Software (active development)

End-to-end ML pipeline for Data Dependent Acquisition (DDA) MS data
HPC software infrastructure for processing tera-scale MS data
An interconnected set of open source machine-learning models for large-scale mass spectrometry based omics analysis.
Completed Software Projects

ML algorithm identifying Austin and atypical brains using fMRI data
ML algorithm for computing similarity between two multivariate fMRI time series
Linear-time tool that allows massive reduction in amount of mass spectrometry data
ML algorithm for computing similarity between two multivariate time series applied to ADHD-200 data
Clusters any time-series data set, specifically iTRAQ LC-MS/MS data sets
Hybrid strategy between MPI and OpenMP to accelerate the compression of big FASTQ datasets